Date: Fri, 29 Mar 2024 22:06:33 +0700 (NOVT) Message-ID: <1508324791.89492.1711724793562@ugene.net> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_89491_790983451.1711724793561" ------=_Part_89491_790983451.1711724793561 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Builds a frequency matrix. Freque= ncy matrices are used for probabilistic recognition of transcription factor= binding sites.
Parameter | Description | Default value |
---|---|---|
Matrix type | Dinucleic matrices are more detailed, while mono= nucleic one are more useful for small input data sets. | Mononucleic |
Parameters in = Workflowa File
Type: fmatrix-build=
Parameter | Parameter in the GUI | Type |
---|---|---|
type | Matrix type | boolean Available values are:
|
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: Input alignment
Name in Workflow&nbs= p;File: in-msa
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
MSA | msa | msa |
And 1 <= /span>output port:
Name in GUI: Frequency matrix
Name in Workflow&nbs= p;File: out-fmatrix
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Frequency matrix | fmatrix | fmatrix |