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Filters FASTQ reads generated by = CASAVA 1.8.
The element works on the basis of the fol= lowing script:
var seqN= ame =3D getName(in_sequence); if(seqName.search(".* [^:]*:N:[^:]*:") =3D=3D 0){ out_sequence =3D in_sequence; }else{ out_sequence =3D null; }=20
= Parameters in GUI
Type: =E2=80=9CScript-CASAVA-FASTQ-= filter=E2=80=9D
The element has no parameters.<= /p>
The element has 1 input port:
Name in GUI: = input data
Name in Workflow File:<= /strong> in
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
And 1 output port:
Name in GUI: = output data
Name in Workflow File:<= /strong> out
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |