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Task Name: = align-clustalw
Multiple sequence ali= gnment with ClustalW.
ClustalW is used as an external = tool and must be installed on your system.
Parameters:
toolpath =E2=80=94 path to the ClustalW executable. = By default, the path specified in the Applicati= on Settings is applied. [String, Optional, Default: =E2=80=9Cdefa= ult=E2=80=9D]
tmpdir =E2=80=94 directory for temporary files. [Str= ing, Optional]
in =E2=80=94 semicolon-separated list of input files= . [String, Required]
out =E2=80=94 output file. [String, Required]
format =E2=80=94 format of the output file. [String,= Optional]
Example:
ugene al= ign-clustalw --in=3DCOI.aln --out=3DCOI.sto --format=3Dstockholm=20