Date: Fri, 29 Mar 2024 11:51:37 +0700 (NOVT) Message-ID: <1240549734.88548.1711687897570@ugene.net> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_88547_1224784334.1711687897570" ------=_Part_88547_1224784334.1711687897570 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Task Name: = align
Performs multiple seq= uence alignment with MUSCLE algorithm and saves the resulting alignment to = file. Source data can be of any format containing sequences or alignments.<= /p>
Parameters:
in - Input alignment [Url datasets]
max-iterations - Maximum number of iterations (using '=
2' by default) [Number]
mode - Se=
lector of preset configurations, that give you the choice of optimizing acc=
uracy, speed,or some compromise between the two. The default favors accurac=
y (using 'MUSCLE default' by default) [Number]
range - Whole alignment or column range e.g. 1..100 (usi=
ng 'Whole alignment' by default) [String]=
stable - Do not rearrange aligned sequences (using 'True' by defau=
lt) [Boolean]
format - Document f=
ormat of output alignment (using 'clustal' by default) [String]
out - Output alignment [String]
Example:
ugene al= ign --in=3Dtest.aln --out=3Dtest_out.aln --format=3Dclustal=20