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Task Name: = find-repeats
Searches for repeats in sequences and sav= es the regions found as annotations.
Parameters:
in =E2=80=94 semicolon-separated list of input files= . [String, Required]
out =E2=80=94 output file with the annotations. [Str= ing, Required]
name =E2=80=94 name of the annotated regions. [Strin= g, Optional, Default: =E2=80=9Crepeat_unit=E2=80=9D]
min-length =E2=80=94 minimum length of the repeats. = [Number, Optional, Default: 5]
identity =E2=80=94 percent identity between repeats.= [Number, Optional, Default: 100]
min-distance =E2=80=94 minimum distance between the = repeats. [Number, Optional, Default: 0]
max-distance =E2=80=94 maximum distance between the = repeats. [Number, Optional, Default: 5000]
inverted =E2=80=94 if tr= ue, searches for the inverted repeats. [Boolean, Optional, Default: fa= lse]
Example:
ugene fi= nd-repeats --in=3Dmurine.gb --out=3Dmurine_repeats.gb --identity=3D99= =20