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Task Name: = align-clustalo
Create alignment with= ClustalO. ClustalO is a general purpose multiple sequence alignment progra= m for proteins.
ClustalO is used as an external = tool and must be installed on your system.
Parameters:
in - Input alignment [Url datasets]
format - Document format of output alignment (using 'clus= tal' by default) [String]
out - Output alignment [String]
max-guidetree-iterations - Maximum number guidetree itera= tions (using '0' by default) [Number]
max-hmm-iterations - Maximum number of HMM iterations (us= ing '0' by default) [Number]
iter - Number of (combined guide-tree/HMM) iterations (us= ing '1' by default) [Number]
toolpath - ClustalO location (using the path specified in= UGENE by default) [String]
auto - Set options automatically (might overwrite some of= your options) (using 'False' by default) [Boolean]
tmpdir - Directory to store temporary files (using UGENE = temporary directory by default) [String]
Example:
ugene al= ign-clustalw --in=3Dtest.aln --out=3Dtest_out.aln --format=3Dclustal= =20