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Builds quality control reports.= p>
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Output directory | Select an output directory. Custom - specify the= output directory in the 'Custom directory' parameter. Workflow - internal = workflow directory. Input file - the directory of the input file. | Input file |
List of adapters | Specifies a non-default file which contains the list of adapter sequences= which will be explicity searched against the library. The file must contai= n sets of named adapters in the form name[tab]sequence. Lines prefixed with= a hash will be ignored. |
|
List of contaminants | Specifies a non-default file which contains the = list of contaminants to screen overrepresented sequences against. The file = must contain sets of named contaminants in the form name[tab]sequence. Line= s prefixed with a hash will be ignored. |
Type: fastqc
Parameter | Parameter in the GUI | Type |
---|---|---|
out-mode | Output directory | string |
adapter | List of adapters | string |
contaminants | List of contaminants | string |
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: = Short reads
Name in Workflow File:<= /strong> in-file
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Source URL | url | string |