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Finds conserved domains in protei= n sequences. In case conserved domains database is downloaded the search ca= n be executed on local machine. The search can be submitted to the NCBI for= remote execution.
Parameter | Description | Default value |
---|---|---|
Annotate as | Name of the result annotations marking found con= served domains. | CDD result |
Database | Currently, CD-Search is offered with the following search databases:
|
CDD Available values are:
|
Database directory | Specifies database directory for local search.= td> | |
Local search | Perform the search on local machine or submit th= e search to NCBI for remote execution. | True |
Expect value | Modifies the E-value threshold used for filtering results. False positi= ve results should be very rare with the default setting of 0.01, results wi= th E-values in the range of 1 and above should be considered putative false= positives. |
Parameter | Parameter in the GUI | Type |
---|---|---|
result-name | Annotate as | string |
db-name | Database | string |
db-path | Database directory | string |
local-search | Local search | boolean |
e-val | Expect value | numeric |
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow&nbs= p;File: in-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
And 1 Name in GUI: Annotations
Name in Workflow&nbs= p;File: out-annotations
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table= |