Date: Thu, 28 Mar 2024 16:23:35 +0700 (NOVT)
Message-ID: <274352476.86214.1711617815214@ugene.net>
Subject: Exported From Confluence
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As the Example1 above shows, both sequence strands are queried by default.
To modify this behavior select the <=
em class=3D"menuselection">Actions =E2=80=A3 Query Sequence Mode =
item in the main menu or Query Sequence Mode toolbar button. You can choose between the following values:
Direct strand =E2=80=94 the search is performed for the direct =
strand only.
Note, that the results ca=
n still be found in the complement strand if you have set the Any or Backward&n=
bsp;direction for an element.
Reverse complementary strand =E2=80=94 the search is performed =
for the reverse complementary strand.
Both strands =E2=80=94 the search is performed for the both str=
ands.
Example2:
Create the following schema:
- The Smith-Waterman algorithm eleme=
nt with AAG patern and the&=
nbsp;Forward direction.
- The Smith-Waterman element with CGG&nb=
sp;pattern and the Forward direction.=
- Add a constraint to these elements.
- Set the Query Sequence Mode to&nb=
sp;Direct strand.
- Run the schema for a sequence.
Only the following results will be found:=
=20
=20
=
=20
=20
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