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Task Name: = pwm-build
Builds a position weight matrix from a mu= ltiple sequence alignment file.
Parameters:
in =E2=80=94 semicolon-separated list of input MSA f= iles. [String, Required]
out =E2=80=94 output file. [String, Required]
type =E2=80=94 type of the matrix. [Boolean, Optiona= l, Default: false]
The following values = are available:
Dinucleic matrices ar= e more detailed, while mononucleic ones are more useful for small input dat= a sets.
algo =E2=80=94 algorithm used to build the matrix. [= String, Optional, Default: =E2=80=9CBerg and von Hippel=E2=80=9D]
The following values = are available:
Example:
ugene pw= m-build --in=3DCOI.aln --out=3Dresult.pwm=20