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Task Name: = fetch-sequence
Fetches a sequence from a remote database= . The supported databases are accesed via alias.
Database | Alias |
---|---|
NCBI Genbank (DNA) | genbank |
NCBI Genbank (protein) | genbank-protein |
Protein Data Bank | pdb |
SwissProt | swissprot |
Uniprot | uniprot |
Parameters:
db= =E2=80=94 database alias to read from. [String, Required]
id= =E2=80=94 semicolon-separated list of resource IDs in the database. [= String, Required]
save-di= r =E2=80=94 directory to store sequence files loaded from the dat= abase. [String, Optional]
Example:
ugene fe= tch-sequence --db=3DPDB --id=3D3INS;1CRN=20