Date: Fri, 29 Mar 2024 02:45:12 +0700 (NOVT)
Message-ID: <2051600914.87912.1711655112089@ugene.net>
Subject: Exported From Confluence
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To add a constraint element add t=
he required algorithm elements to the scene and drug&drop the required =
constraint element.
When a constraint element is add=
ed, two algorithm elements&n=
bsp;are selected.
There are four types of constraints that =
you can impose on the positional relationship of the results obtained from =
the algorithms calculations: End-Start,&nb=
sp;Start-End, End-E=
nd and Start-Start.
On the image below you can see a schema with Pattern and ORF algori=
thm elements and an End-Start constraint:
=20
=20
=
=20
=20
This means the following:
1. The algorithm elem=
ents specify to analyze the sequence with Pattern and ORF algorithms. The r=
esults of these analyses are the sets of annotations.
2. The condition says=
that the distance between a =E2=80=9CPattern annotation end=E2=80=9D and a=
n =E2=80=9CORF annotation start=E2=80=9D should be within the specified bou=
nds, i.e.:
Let:
pattern_annot=
_end :=3D the last nucleotide of an annotation obtained from =
the Pattern algorithm calculations
orf_annot_sta=
rt :=3D the first nucleotide of an annotation obtained from t=
he ORF algorithm calculations
The constraint is:
0bp <=3D Distance(pattern_anno=
t_end, orf_annot_start) <=3D 100bp
Find the details on each constraint eleme=
nt below.
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