This workflow converts This workflow converts multiple alignment file(s) of any format to ClustalW document(s). If source file is a sequence format (e.g. FASTA), all contained sequences are added to the result alignment. Yet no real alignment is performed, this particular workflow illustrates particular workflow illustrates pure data format conversion.To get this workflow working, you only need to select "Alignment Reader" task, so its' parameters appear in Property Inspector panel, and specify source file(s) at "URL" field. Launch the workflow with pressing Ctrl+R shortcut.
After running the workflow, target clustal file will appear in the same folder as the source file, with the same name but different extension (".aln").
If several input files were selected, several clustal files will be generated accordingly.
You can override the target file location by editing "URL" parameter of "Write ClustalW" task.
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If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
Workflow Sample Location
The workflow sample "Convert Alignments to ClustalW" can be found in the "Conversions" section of the Workflow Designer samples.
Workflow Image
The workflow looks as follows:
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Workflow Wizard
The wizard has 2 pages.
Input MSA(s): On this page you must input MSA(s).
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Alignments to ClustalW_1.png"/> <br> </center>
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Output data: On this page you can modify output settings.
HTML <center> <br> <img src="/wiki/download/attachments/16122705/Convert Alignments to ClustalW_2.png"/> <br> </center>