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In the list of sequences select the corresponding mRNA sequence and click OK. 

The following dialog will appear:

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     <img src="/wiki/download/attachments/16122411/Spliced Alignment (mRNA to genomic)_0.png"/>
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</center>

Here you can set up a file to store annotations.  It could be either an existing annotation table object or a new annotation table or auto-annotations table (if it is possible). Also you can modify the group name parameter and add a description.

The resulting alignment will be saved as an annotation with the corresponding name "exon":

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     <img src="/wiki/download/attachments/7438409/Spliced Alignment (mRNA to genomic)_1.png"/>
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</center>

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