Workflow Designer Documentation v. 1.17.0
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  • Search for TFBS

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  1. Input sequence(s): On this page you must input sequence(s). 

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  2. Search for TFBS parameters: On this page you can modify search for TFBS parameters. 

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    The following parameters are available:

    Weight MatrixSemicolon-separated list of paths to the input files.
    Result annotationAnnotation name for marking found regions.
    Search inWhich strands should be searched: direct, complement or both.

    Min score

    		Minimum score to detect transcription factor binding site

     

    SITECON model

    		Semicolon-separated list of paths to the input files.

     

    Result annotation

    		Annotation name for marking found regions.

     

    Search in

    		Which strands should be searched: direct, complement or both.

     

    Min score

    		Minimum score to detect transcription factor binding site

     

    Min err1Alternative setting for filtering results, minimal value of Error type I.
    Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.
    Max err2Alternative setting for filtering results, max value of Error type II.
    Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.

  3. Output data: On this page you can modify output parameters. 

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    The following parameters are available:

    Result file

     Location of output data file. If this attribute is set, slot "Location" in port will not be used.

    Accumulate results

    Accumulate all incoming data in one file or create separate files for each input.In the latter case, an incremental numerical suffix is added to the file name.