Child pages
  • De novo Assembly with Spades

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  1. Genome assembly settings: On this page you must input single reads and optionally modify advanced parameters. 

    HTML
    <center>
      <br>
      <img src="/wiki/download/attachments/16122728/De novo Assembly with Spades_2.png"/>
      <br> 
    </center>

    The following parameters are available:

    Single-end reads URL(s)Semicolon-separated list of pathes to the input files.
    Output directoryDirectory to save Spades output files.
    Dataset typeInput dataset type.

    Running mode

    Running mode.

    K-mers

    k-mer sizes (-k).

The wizard for paired tags has 1 page.

  1. Genome assembly settings: On this page you must input paired reads and optionally modify advanced parameters. 

    HTML
    <center>
      <br>
      <img src="/wiki/download/attachments/16122728/De novo Assembly with Spades_3.png"/>
      <br> 
    </center>

     

     The following parameters are available:

    Left reads URL(s)Semicolon-separated list of pathes to the input files.
    Right reads URL(s)Semicolon-separated list of pathes to the input files.
    Output directoryDirectory to save Spades output files.
    Dataset typeInput dataset type.

    Running mode

    Running mode.

    K-mers

    k-mer sizes (-k).