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  • Gene-by-gene Approach for Characterization of Genomes

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  1. Input sequence(s): On this page you must input sequence(s). 

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  2. BLAST search: On this page you can modify BLAST search parameters. 

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    The following parameters are available:

    Search typeSelect type of BLAST searches.
    Database PathPath with database files.
    Database NameBase name for BLAST DB files.
    Expected valueThis setting specifies the statistical significance threshold for reporting matches against database sequences.
    Annotate asName for annotations.

    Gapped alignment

    Perform gapped alignment.

     

    Tool Path

    External tool path.

     

    BLAST outputLocation of BLAST output file.
    BLAST output typeType of BLAST output file.
    Temporary directoryDirectory for temporary files.
    Gap costsCost to create and extend a gap in an alignment.
    Match scoresReward and penalty for matching and mismatching bases.
  3. Output data: On this page you can modify output parameters. 

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