Workflow Designer Documentation v. 1.17.0
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  • Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences

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  1. Input sequence(s): On this page you must input sequence(s). 

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  <img src="/wiki/download/attachments/16122741/Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences_1.png"/>
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</center>

  2. Search for TFBS 1, 2, 3: On these pages you can modify search for TFBS parameters. 

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    <center>
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  <img src="/wiki/download/attachments/16122741/Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences_2.png"/>
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    The following parameters are available:

    Input file(s)Semicolon-separated list of paths to the input files.
    Result annotationAnnotation name for marking found regions.
    Search inWhich strands should be searched: direct, complement or both.
    Min score

    Recognition quality percentage threshold.

    If you need to switch off this filter choose the lowest value

    Min Err 1

    Alternative setting for filtering results, minimal value of Error type I.
    Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.

    If you need to switch off this filter choose "0" value

    Max Err 2

    Alternative setting for filtering results, max value of Error type II.
    Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.

    If you need to switch off this filter choose "1" value

  3. Output data: On this page you can modify output parameters. 

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    <center>
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  <img src="/wiki/download/attachments/16122741/Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences_3.png"/>
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</center>