CAP3 (CONTIG ASSEMBLY PROGRAM Version 3) is a sequence assembly program for small-scale assembly with or without quality values. Click this link to open CAP3 homepage. CAP3 is embedded as an external tool into UGENE.
Open Tools ‣ DNA assemblySanger data analysis submenu of the main menu.
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Select the Contig assembly the Reads de novo assembly (with CAP3) item to use the CAP3.
The Contig Assembly With CAP3 dialog appears.
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