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Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Result annotation | Name of the result annotations. | hmm_signal |
| Filter by high E-value | E-value filtering can be used to exclude low-probability hits from result. | 1e-1 |
| Number of seqs | Calculates the E-value scores as if we had seen a sequence database of sequences. | 1 |
| Filter by low score | Score based filtering is an alternative to E-value filtering to exclude low-probability hits from result. | -1000000000.0 |
Parameters in Schema File
Type: hmm2-search
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| result-name | Result annotation | string |
| e-val | Filter by high E-value | numeric |
| seqs-num | Number of seqs | numeric |
| score | Filter by low score | numeric |
Input/Output Ports
The element has 2 input port. The first gets the input sequence:
Name in GUI: Input sequence
Name in Schema File: in-sequence
Slots:
| Slot In GUI | Slot in Schema File | Type |
|---|---|---|
| Sequence | sequence | sequence |
The second input port gets the HMM profile:
Name in GUI: HMM profile
Name in Schema File: in-hmm2
Slots:
| Slot In GUI | Slot in Schema File | Type |
|---|---|---|
| HMM profile | hmm2-profile | hmm2-profile |
And 1 output port:
Name in GUI: HMM annotations
Name in Schema File: out-annotations
Slots:
| Slot In GUI | Slot in Schema File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |