Filters FASTQ reads generated by CASAVA 1.8.
The element works on the basis of the following script:
| Code Block |
|---|
var seqName = getName(in_sequence);
if(seqName.search(".* [^:]*:N:[^:]*:") == 0){
out_sequence = in_sequence;
}else{
out_sequence = null;
} |
Parameters in GUI
The element has no parameters.
Parameters in Workflow File
Type: “Script-CASAVA-FASTQ-filter”
The element has no parameters.
Input/Output Ports
The element has 1 input port:
Name in GUI: input data
Name in Workflow File: in
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: output data
Name in Workflow File: out
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |