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Parameter | Description | Default value |
---|---|---|
Database name (required) | Base name for BLAST DB files. | |
Database path (required) | Path to the database files. | |
Tool path (required) | Path to a BLAST+ executable. | default |
Search type (required) | Selects the type of BLAST searches. | blastn |
Annotate as | Name of the result annotations. | misc_feature |
Expected value | Expectation threshold value. | 10 |
Temporary directory (required) | Directory for temporary files. | default |
Parameters in Schema File Workflow File
Type: blast-plus
Parameter | Parameter in the GUI | Type |
---|---|---|
db-name | Database name | string |
db-path | Database path | string |
tool-path | Tool path | string |
blast-type | Search type | string Available values are:
|
result-name | Annotate as | string |
e-val | Expected value | numeric |
temp-dir | Temporary directory | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequence
Name in Schema File Workflow File: in-sequence
Slots:
Slot In GUI | Slot in Schema File | Type |
---|---|---|
Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Annotations
Name in Schema File Workflow File: out-annotations
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table |