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| Note |
|---|
The specified algorithm is provided to the Repeat Finder plugin as an input parameter. In most cases the Auto value is appropriate. |
Minimum repeat length — allows to draw only such matches between the sequences that are continuous and long enough. For example if it equals to 3bp, then only repeats will be found that contain 3 and more base symbols.
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After the parameters are set, press the OK button. The dotplot will appear in the Sequence View:
| HTML |
|---|
<center>
<br>
<img src="/wiki/download/attachments/4227418/Creating Dotplot_2.png"/>
<br>
</center> |
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Visible diagonal lines indicate matches between sequences in the given particular region.
See also: