Unipro UGENE User Manual
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  1. High Throughput Sequence QC Report by FastQC: On this page you must input FASTQ file(s) and optionally modify advanced parameters. 

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     The following parameters are available:

    FASTQ URL(s)Semicolon-separated list of pathes to the input files.
    Output directorySelect an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file.
    Custom directorySelect the custom output directory.

    List of adapters

    		Specifies a non-default file which contains the list of adapter sequences which will be explicity searched against the library. The file must contain sets of named adapters in the form name[tab]sequence. Lines prefixed with a hash will be ignored.
     


    List of contaminants

    Specifies a non-default file which contains the list of contaminants to screen overrepresented sequences against. The file must contain sets of named contaminants in the form name[tab]sequence. Lines prefixed with a hash will be ignored.