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You can add or remove input files using Add and Remove buttons. To remove all files click the Remove all button. Input files are files with a long DNA reads in FASTA, FASTQ, SCF or ABI formats. At least one input file should be added. Input a Result contig name and press the Run button. CAP3 produces assembly results in the ACE file format (”.ace”). The file contains one or several contigs assembled from the input reads.
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The quality scores for FASTA sequences can be provided in an additional file. The file must be located in the same folder as the original sequences and have the same name as FASTA file, but another extention: .qual. |
Also you can change the following advanced parameters:
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