Using thist workflow you can select (or reject) only those sequence that match any pattern you input. To find sequences matching a pattern:
- In Read Sequence element specify a list of sequences you need to filter
- In Find Pattern element input you pattern(s) or file with pattern in any sequence or newline-delimited format.
- In Write Sequence element specify an output file
To find sequences that DO NOT match a pattern:
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If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
Workflow Sample Location
The workflow sample "Filter Sequence That Match a Pattern" can be found in the "Scenarios" section of the Workflow Designer samples.
Workflow Image
The workflow looks as follows:
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<center>
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<img src="/wiki/download/attachments/16122732/Filter Sequence That Match a Pattern.png"/>
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</center> |
Workflow Wizard
The wizard has 3 pages.
Input sequence(s): On this page you must input sequence(s).
HTML <center> <br> <img src="/wiki/download/attachments/16122732/Filter Sequence That Match a Pattern_1.png"/> <br> </center>Find pattern: On this page you must input pattern(s) and you can modify searching parameters.
HTML <center> <br> <img src="/wiki/download/attachments/
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16122732/Filter
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Sequence
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That
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Match a
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Pattern_2.png"/> <br> </center>
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Output data: On this page you can modify output parameters.
HTML <center> <br> <img src="/wiki/download/attachments/16122732/Filter Sequence That Match a Pattern_3.png"/> <br> </center>