Output a table of genes found in a reference sequence.
Element type: genebygene-report-id
Parameters in GUI
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output file | File to store a report. |
| output-file | string | |
| Annotation name | Annotation name used to compare genes and reference genomes |
| . | blast-result | annotation_name | string |
| Existing file | If a target report already exists you should specify how to handle that. Merge two table in one. Overwrite or Rename existing file. |
| Merge | existing | string | |
| Identity cutoff | Identity between gene sequence length and annotation length in |
string
| percent. BLAST identity (if specified) is checked after | 90.0000% |
Parameters in Workflow File
Type: genebygene-report-id
| identity |
| numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Gene by gene report data
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Input annotations | gene-ann | ann-table-list |
| Input sequences | gene-seq | seq |