Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

External toolWindows (64-bit)macOS (64-bit)Linux (64-bit)
bedGraphToBigWig444
bedtools2.20.12.20.12.20.1
BLAST+2.2.302.2.302.2.30
Bowtie0.12.71.0.01.0.0
Bowtie22.3.4.32.3.4.32.3.4.3
BWA0.7.120.7.120.7.12
CAP312/21/07

12/21/07

12/21/07
CEAS1.0.21.0.21.0.2

CLARK

N/A1.2.4 (UGENE-customized)1.2.4 (UGENE-customized)
ClustalO1.2.121.2.131.2.14
ClustalW2.12.12.1
ConductGOVersion not specifiedVersion not specifiedVersion not specified
conservation_plot0.1.00.1.00.1.0
Cufflinks toolsN/A2.0.22.0.2
Cutadapt1.7.11.7.11.7.1
DIAMONDN/A0.9.220.9.22
FastQC0.11.20.11.20.11.2
JRE (java)1.8.0N/AN/A
HMMER3.1b23.1b23.1b2
KrakenN/A1.01.0
MACS1.4.21.4.21.4.2
MAFFT7.4507.4507.450

MetaPhlAn2

N/A2.0.02.0.0
MrBayes3.2.33.2.33.2.3
peak2gene1.021.021.02
perl5.24.3N/AN/A
PhyML201204122012041220120412
python2.7.52.7.52.7.5
RscriptR is not included into the External Tools Packages. However, it may be installed using the UGENE Online Installer package.
samtools0.1.190.1.190.1.19
SeqPos1.011.011.01
SnpEff4.3i4.3i4.3i
SPAdesN/A3.12.03.12.0
SpideyVersion not specifiedN/AVersion not specified
StringTieN/A1.3.4d1.3.4d
T-Coffee8.9911.0011.00
TopHatN/A2.1.12.1.1
Trimmomatic0.380.380.38
vcftools0.1.12b0.1.12b0.1.12b
WEVOTEN/AVersion not specifiedVersion not specified