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Short reads — each added short read is a small DNA sequence file. At least one read should be added.
| Note |
|---|
Short reads length for Bowtie can’t be more than 1024. |
You can also configure other parameters. They are the same as in the original Bowtie 2 (you can read detailed description of the parameters on the Bowtie 2 manual page).
Select one of the following alignment modes:
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