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External toolWindows (64-bit)macOS (64-bit)Linux (64-bit)
bigwig444
bedtools2.29.22.29.22.29.2
BLAST+2.10.1+2.10.1+2.10.1+
Bowtie1.3.01.3.01.3.0
Bowtie22.4.22.4.22.4.2
BWA

0.7.17-r1188

0.7.17-r11880.7.17-r1188
CAP312/21/07

12/21/07

10/15/07
CistromeCEAS Tools (need Rscript)0.9.9.70.9.9.70.9.9.7

conservation_plot (need Rscript)

0.10.10.1

go_analysis (need Rscript)

1.0.11.0.11.0.1
MACS1.4.21.4.21.4.2

peak2gene

1.021.021.02

seqpos (need Rscript)

2.02.02.0

CLARK

N/A1.2.4 (UGENE-customized)1.2.4 (UGENE-customized)
ClustalO1.2.21.2.31.2.4
ClustalW2.12.12.1
CufflinksN/A2.0.22.0.2
cutadapt1.7.11.7.11.7.1
DIAMONDN/A0.9.220.9.22
FastQC0.11.90.11.90.11.9
HMMER3.3.13.3.13.3.1
JRE (java)

1.8.0_192

1.8.0_1921.8.0_192
KrakenN/A1.01.0
MAFFT7.4757.4757.475

MetaPhlAn2

N/A2.7.72.0.0
MrBayes3.2.33.2.33.2.3
Perl5.24.35.18.2N/A
PhyML201204122012041220120412
pythonpython2.7.52.7.52.7.5
BioN/A1.731.73
django1, 5, 11, 5, 11, 5, 1
numpy1.7.11.16.01.16.0
RscriptR is not included into the External Tools Packages.
SAMtoolsBCFtools0.1.190.1.190.1.19
SAMtools0.1.190.1.190.1.19
Tabix0.2.50.2.60.2.5
vcfutilsVersion not specifiedVersion not specifiedVersion not specified
SnpEff4.3i4.3i4.3i
SPAdesN/A3.14.13.14.1
SpideyVersion not specifiedN/AVersion not specified
StringTieN/A1.3.4d1.3.4d
T-CoffeeVersion not specified8.9911.0013.44
TopHatN/A2.1.12.1.1
TrimmomaticVersion not specifiedVersion not specified0.390.390.39
vcf-consensusVersion not specifiedVersion not specified0.1.12b0.1.12b0.1.12b
WEVOTEN/AVersion not specifiedVersion not specified1.01.0