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  • Convert seq/qual pair to Fastq

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This schema allows workflow allows to add PHRED quality scores to the sequence and save output to Fastq. For example, one can read a Fasta file, import PHRED quality values from corresponding qualities file and export the result to Fastq.
To execute the schema do workflow do the following:1)

  1. Select "Sequence Reader" task and specify source file(s) at "URL" field in the Property Editor.

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  1. Select "Import PHRED qualities" task and specify URL to the quality file. Usually such files have .qual extension.

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  1. Launch the schema with pressing Ctrl+R shrotcut.

After running the schema workflow, target fastq file will appear in the same folder as the source file, with the same name but diffrent extension.

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