Extract the consensus sequence string from the incoming multiple sequence alignment.
Parameters in GUI
Parameter | Description | Default value | |||
---|---|---|---|---|---|
Algorithm | The algorithm of consensus extracting. | ||||
Threshold | The threshold of the algorithm. | 100 | Keep gaps | Set this parameter if the result consensus must keep the gaps. | True |
Parameters in Workflow File
Type: extract-msa-consensus-string
Parameter | Parameter in the GUI | Type | |||
---|---|---|---|---|---|
algorithm | Algorithm | string | |||
threshold | Threshold | numeric | keep-gaps | Keep gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-msa
Name in Workflow File: in-msa
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
MSA | msa | msa |
And 1 output port:
Name in GUI: out-sequence
Name in Workflow File: out-sequencetext
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
SequencePlain text | sequencetext | seq string |