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Prepare a query schema and save it to a file.

Open a nucleotide sequence that you want to analyze with this query schema. You can see the sequence displayed in the Sequence view.

Select the Analyze ‣ Find query designer pattern item in the Actions main menu or in the context menu:

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     <img src="/wiki/download/attachments/4686246/Running Schema from the Sequence View.png"/>
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The Analyze with query schema dialog appears:

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     <img src="/wiki/download/attachments/4686246/Running Schema from the Sequence View_1.png"/>
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Browse for the file with a query schema. The selected schema preview appears in the dialog, for example:

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     <img src="/wiki/download/attachments/4686246/Running Schema from the Sequence View_2.png"/>
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You can also adjust other parameters:

Range — the sequence range to analyze with the query schema, you can select:

• • Whole sequence — to analyze the whole sequence.
  • Selected range — to analyze the currently selected sequence region. This item is disabled if there is no region selected.
  • Custom range — to specify manually a range to analyze.

Save annotation(s) to — specifies where to save the result annotations:

• • Existing annotation table — this option is available if there is an existant annotation table and the document is not locked.
  • Create new table — saves the result annotations to the specified file in GenBank format.

Group name — name of the annotation group. Note, that the annotation name is set in the query schema file.