To export a consensus sequence variations of the assembly, select either the Export consensus item variations item in the Consensus Area context menu or the Export ‣ Consensus item in the Reads Area context menu.The Export Consensus dialog appears.
The following dialog will appear:
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<img src="/wiki/download/attachments/42275487667882/Exporting Consensus Variations.png"/>
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Select a file, mode and the file format. The consensus following modes are available: Variations, Similar and All. Variations can be exported as to a FASTA, FASTQ, GFF or GenBank SimpleSNP or VCFv4 file.
Modify, if required, the exported sequence name and choose the consensus algorithm.
The consensus is exported with gaps if the Keep gaps check box has been checked.
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The consensus sequence is exported to the file and if the Add to project check box has been checked it is added to the current project and opened.
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The Export consensus variations feature is available when the reference sequence is associated with assembly. |