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You can use the Save list... button to export the list of matrices to a *.csv file. Later the list can be loaded from the file using the Load list... button.

The rest options are standard sequence search options: the strand and the sequence region where to search for matches.

After specifying the necessary options press the Search button. The found results will appear in the dialog table. The corresponding results identity scores are in the Score column.

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     <img src="/wiki/download/attachments/4227727/Weight Matrix_2.png"/>
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Also you can see the matrix by using the View matrix button:

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     <img src="/wiki/download/attachments/4227727/Weight Matrix_2_1.png"/>
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The regions found by the weight matrix algorithm can be saved as annotations to the DNA sequence in the Genbank format by pressing the Save as annotations button.

After saving, the file with resulting annotations will be automatically added to the current project, and the annotations will be added to the original sequence.

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     <img src="/wiki/download/attachments/4227727/Weight Matrix_34.png"/>
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See also:

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