The Remote BLAST plugin provides the a capability to annotate sequences with information stored in the NCBI BLAST remote database.
To perform a remote database search open the a Sequence View, select the a sequence region to analyze and click the Analyze ‣ Query remote NCBI BLAST database context menu item. If a region is not selected the whole sequence will be analyzed.
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You can see the description of the annotation saving parameters here.
Search timeout — sometimes a database doesn’t respond, therefore you need to re-wait for the response. This option sets the time that will be spent for re-appeal to the database. Note that in case of long sequences time for request preparation increases and the search takes several minutes.the remote task terminated if the timeout is reached.
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There is a little difference in default values of parameters between NCBI Nucleotide BLAST web interface and UGENE:
Check the Megablast option, if you want exactly the same results to be found in UGENE as you had in the NCBI web interface. |
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The Advanced options tab is not available when the cdd search is selected.
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