Child pages
  • Assembly with Spades

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migrated to Confluence 5.3

Use this workflow sample to assemble genomes from short reads with Spades.

Tip
titleHow to Use This Sample

If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.

Workflow Sample Location

The workflow sample "Assembly with Spades" can be found in the "NGS" section of the Workflow Designer samples.

Workflow Image

There are two versions of the workflow available. The workflow for single tags looks as follows:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/14058847/Assembly with Spades.png"/>
  <br> 
</center>

The workflow for paired tags appearance is the following:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/14058847/Assembly with Spades_1.png"/>
  <br> 
</center>
Workflow Wizard

The wizard for single tags has 1 page.

  1. Assemble Genomes with Spades: On this page you must input single reads and optionally modify advanced parameters. 

    HTML
    <center>
      <br>
      <img src="/wiki/download/attachments/14058847/Assembly with Spades_2.png"/>
      <br> 
    </center>

The wizard for paired tags has 1 page.

  1. Assemble Genomes with Spades: On this page you must input paired reads and optionally modify advanced parameters. 

    HTML
    <center>
      <br>
      <img src="/wiki/download/attachments/14058847/Assembly with Spades_3.png"/>
      <br> 
    </center>