Workflow Designer Documentation v. 1.16.0
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  • Search for Inverted Repeats

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For each input sequence the workflow performs a search of inverted repeats.

Then it saves the repeats found on the direct strand to the "direct_strand_repeat_units.fa" file and the complement ones to the "compl_strand_repeat_units.fa" file.

Tip
titleHow to Use This Sample

If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.

Workflow Sample Location

The workflow sample "Search for Inverted Repeats" can be found in the "Scwnarios" section of the Workflow Designer samples.

Workflow Image

The opened workflow looks as follows:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/14058855/Search for Inverted Repeats.png"/>
  <br> 
</center>
Workflow Wizard

The wizard has 3 pages.

  1. Input sequence(s): On this page you must input sequence(s).  

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/14058855/Search for Inverted Repeats_1.png"/>
  <br> 
</center>
  2. Search for inverted repeats parameters: On this page you can modify inverted repeats parameters.  
    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/14058855/Search for Inverted Repeats_2.png"/>
  <br> 
</center>
  3. Output Sequences: On this page you can modify result file(s) settings.  
    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/14058855/Search for Inverted Repeats_3.png"/>
  <br> 
</center>