Child pages
  • Building HMM Model (HMM Build)

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migrated to Confluence 5.3

HMM build tool is used to build a new HMM profile from a multiple alignment.

You can use any alignment file formats supported by UGENE. The output HMM profile format is compatible with the HMMER2 package.

HTML
<center>
     <br>
     <img src="/wiki/download/attachments/4227685/Building HMM Model (HMM Build).png"/>
     <br>
</center>
Note

The HMM build tool does not automatically calibrate a profile. Use the HMM calibrate tool to calibrate the profile.