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Press the Search JASPAR database button in the Weight matrix search dialog. The following dialog will appear:

     <img src="/wiki/download/attachments/4227729/Searching JASPAR Database.png"/>

Here the matrices are divided into categories and you can read detailed information of a matrix which is represented by its properties. It could help you to choose the matrix properly.


The matrices provided with UGENE are located in the $UGENE/data/position_weight_matrix folder.