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Task Name: fetch-sequence

Fetches a sequence from a remote database. The supported databases are accesed via alias.

DatabaseAlias
NCBI Genbank (DNA)genbank
NCBI Genbank (protein)genbank-protein
Protein Data Bankpdb
SwissProtswissprot
Uniprotuniprot

 

Parameters:

db — database alias to read from. [String, Required]

id — semicolon-separated list of resource IDs in the database. [String, Required]

save-dir — directory to store sequence files loaded from the database. [String, Optional]

Example:

Code Block
ugene fetch-sequence --db=PDB --id=3INS;1CRN