Workflow Designer Documentation v. 1.17.0
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  • Raw RNA-Seq Data Processing

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The wizard for single-end reads has 5 page4 pages.

  1. Input data: On this page you must input FASTQ file(s). 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_2.png"/>
  <br> 
</center>

  2. Pre-processing: On this page you can modify filtration parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_3.png"/>
  <br> 
</center>

  3. Mapping: On this page you must input reference and optionally modify advanced parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_4.png"/>
  <br> 
</center>

  4. Output data: On this page you must input output parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_5.png"/>
  <br> 
</center>

The wizard for paired-end reads has 5 page4 pages.

  1. Input data: On this page you must input FASTQ file(s). 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_6.png"/>
  <br> 
</center>

  2. Pre-processing: On this page you can modify filtration parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_7.png"/>
  <br> 
</center>

  3. Mapping: On this page you must input reference and optionally modify advanced parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_8.png"/>
  <br> 
</center>

  4. Output data: On this page you must input output parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/1405884616122727/Raw RNA-Seq Processing_9.png"/>
  <br> 
</center>

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