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Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Input files | Semicolon-separated list of datasets to the input files. | |
Mode | If the file contains more than one sequence, “split” mode sends them as is to output, while “merge” appends all the sequences and outputs the merged sequence. | Split |
Merging gap | In the “merge” mode, inserts the specified number of gaps between the original sequences. This is helpful e.g. to avoid finding false positives at the merge boundaries. | 10 |
Sequence count limit | Split mode only. Read only first N sequences from each file. Set 0 value for reading all sequences. | 0 |
Accession filter | Only reports a sequence with the specified accession (id). |
Parameters in Schema File Workflow File
Type: read-sequence
Parameter | Parameter in the GUI | Type |
---|---|---|
url-in | Input files | string |
mode | Mode | numeric Available values are:
|
merge-gap | Merging gap | numeric |
sequence-count-limit | Sequence count limit | numeric |
accept-accession | Accession filter | string |
Input/Output Ports
The element has 1 output port:
Name in GUI: Sequence
Name in Schema File Workflow File: out-sequence
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
Set of annotations | annotations | annotation-table |
Source URL | url | string |