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Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Result type | Copy original annotations or annotate found regions with new ones. | Create new annotations |
Result annotation (required) | Name of the result annotation to mark found collocations. | misc_feature |
Include boundaries | Include most left and most right boundary annotations regions into result or exclude them. | True |
Group of annotations (required) | List of annotation names to search. Found regions will contain all the named annotations. | |
Region size | Effectively this is the maximum allowed distance between the interesting annotations in a group. | 1000 |
Must fit into region | Specifies whether the interesting annotations should entirely fit into the specified region to form a group. | False |
Parameters in Schema File Workflow File
Type: collocated-annotation-search
Parameter | Parameter in the GUI | Type |
---|---|---|
result-type | Result type | string |
result-name | Result annotation | string |
annotations | Group of annotations | string |
include-boundary | Include boundaries | boolean |
region-size | Region size | numeric |
must-fit | Must fit into region | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input data
Name in Schema File Workflow File: in-sequence
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
Set of annotations | annotations | annotation-table-list |
And 1 output port:
Name in GUI: Group annotations
Name in Schema File Workflow File: out-annotations
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table |