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  • Import PHRED Qualities Element

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Parameters in GUI

ParameterDescriptionDefault value
PHRED input (required)Path to a file with PHRED quality scores. 
Quality formatFormat to encode quality scores.Sanger

Parameters in Schema File Workflow File

Type: import-phred-qualities

ParameterParameter in the GUIType
url-inPHRED inputstring
quality-formatQuality format

string

Available values are:

  • Sanger
  • Illumina 1.3+
  • Solexa/Illumina 1.0

Input/Output Ports

The element has 1 input port:

Name in GUI: DNA sequences

Name in Schema File Workflow File: in-sequence

Slots:

Slot In GUISlot in Schema Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: DNA sequences with imported quailities

Name in Schema File Workflow File: out-sequence

Slots:

Slot In GUISlot in Schema Workflow FileType
Sequencesequencesequence