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  • HMM Search Element

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Parameters in GUI

ParameterDescriptionDefault value
Result annotationName of the result annotations.hmm_signal
Filter by high E-valueE-value filtering can be used to exclude low-probability hits from result.1e-1
Number of seqsCalculates the E-value scores as if we had seen a sequence database of sequences.1
Filter by low scoreScore based filtering is an alternative to E-value filtering to exclude low-probability hits from result.-1000000000.0

Parameters in Schema File Workflow File

Type: hmm2-search

ParameterParameter in the GUIType
result-nameResult annotationstring
e-valFilter by high E-valuenumeric
seqs-numNumber of seqsnumeric
scoreFilter by low scorenumeric

Input/Output Ports

The element has 2 input port. The first gets the input sequence:

Name in GUI: Input sequence

Name in Schema File Workflow File: in-sequence

Slots:

Slot In GUISlot in Schema Workflow FileType
Sequencesequencesequence

The second input port gets the HMM profile:

Name in GUI: HMM profile

Name in Schema File Workflow File: in-hmm2

Slots:

Slot In GUISlot in Schema Workflow FileType
HMM profilehmm2-profilehmm2-profile

And 1 output port:

Name in GUI: HMM annotations

Name in Schema File Workflow File: out-annotations

Slots:

Slot In GUISlot in Schema Workflow FileType
Set of annotationsannotationsannotation-table