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Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Result annotation | Name of the result annotations. | misc_feature |
| Search in | Specifies which strands should be searched: direct, complement or both. | both strands |
| Min score | Minimum score to detect transcription factor binding site in percents. | 85 |
Parameters in Schema File Workflow File
Type: wmatrix-search
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| result-name | Result annotation | string |
| strand | Search in | numeric Available values are:
|
| min-score | Min score | numeric |
Input/Output Ports
The element has 2 input ports. The first port:
Name in GUI: Sequence
Name in Schema File Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
The second input port gets the SITECON model:
Name in GUI: Weight matrix
Name in Schema File Workflow File: in-wmatrix
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Weight matrix | wmatrix | wmatrix |
And there is 1 output port:
Name in GUI: Weight matrix annotations
Name in Schema File Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |