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- Embedded tool: the tool is integrated into the UGENE source code. Such tools are always available in UGENE independently on the UGENE package type and operating system.
- External tool:
- Integrated (supported) external tool: the tool executable file (or files) is provided with UGENE. It is launched when one uses the tool in the UGENE GUI. The result is also shown in the UGENE GUI. Note that the tool may be available on some operating systems only.
- Custom external tool: it is possible to add any custom external tool as a workflow element in the Workflow Designer. See "Custom External Tools" documentation chapter for details.
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