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There are various It is possible to apply different coloring schemes for DNA and amino alphabets available.

To change the scheme, activate the Colors context menu:

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     <img width="500" src="/wiki/download/attachments/23331058/Coloring Schemes.png"/>
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an alignment, so that nucleotide or amino acid characters are colored depending on some rules. To set another coloring scheme, select the required item in the main (Actions ‣ Colors) or context menu (Colors) of the Alignment Editor, or in the Color combo box on the Options Panel. For example:

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     <img width="600500" src="/wiki/download/attachments/23331058/Coloring Schemes_1.png"/>
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