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Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Document format | Document format of output file. | bam |
Build index (BAM only) | Build BAM index for the target BAM file. The file .bai will be created in the same directory. | True |
Output file | Location of output data file. If this attribute is set, slot "Location" in port will not be used. | |
Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). If Rename option is chosen existing file will be renamed. | Rename |
Parameters in
Schema FileWorkflow File
Type: write-assembly
Parameter | Parameter in the GUI | Type |
---|---|---|
document-format | Document format | string |
build-index | Build index (BAM only) | boolean |
out-url | Output file | string |
write-mode | Existing file | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Assembly
Name in Schema File Workflow File: in-assembly
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Assembly data | assembly | assembly |
Location | url | string |